Instruction of this lesson was recorded on February 19th, 2016, as part of the Data Intensive Biology training program run by C.
Introduction: models and why we like them. $ cd & cd Desktop/scipy-optimize/scipy-optimize-data Topics Conda is available in Anaconda and Miniconda (an easy-to-install download with just Python and conda). Conda manages Python itself as a package, so that conda update python is possible, in contrast to pip, which only manages Python packages. You can access this folder from the Unix shell with: The SciPy site has more details on using Homebrew to install SciPy on macOS. You should end up with a new folder called scipy-optimize-data. If it’s not unzipped yet, double-click on it to unzip it. Make a new folder in your Desktop called scipy-optimize.ĭownload scipy-optimize-data.zip and move the file to this folder. You need to download some files to follow this lesson:. Another option is to use the conda package manager in the unix shell as follows: $ conda install scipy If this raises an error, you might need to run the following in the unix shell: $ pip install scipyĮxplanation: pip is a python ‘package manager’, which will go grab the necessary software for this lesson and install it on your machine. You can test that by running the following in an IPython session: If you have used your computer in a Software Carpentry workshop, it is likely that you already have it installed. 
How can I install a specific package, such as SciPy conda install scipy. Learners need to have the scipy library installed on their computers. The correct way to install scipy using conda is: conda install scipy conda docs - Managing Packages.
You can safely ignore deprecation warnings and other messages (if any), py ssssss = warnings summary = ( warnings are mostly ok ) = 223 passed, 73 skipped, 1 xpassed, 9 warnings in 771.11 s ( 0 : 12 : 51 ) = ini plugins : mpl - 0.122 collected 297 items oggm / tests / test_benchmarks. = test session starts = platform linux - Python 3.8.5, pytest - 6.0.2, py - 1.9.0, pluggy - 0.13.1 Matplotlib : 3.3.2 Freetype : 2.6.1 rootdir : / home / mowglie / disk / Dropbox / HomeDocs / git / oggm - fork, configfile : pytest.
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